Table 4 Summary of hole-filling results.
From: A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
Pathway/Genome Database | |||
|---|---|---|---|
MtbRv | Caulo | Vcho | |
missing reactions w/ isozyme seqs | 195 | 162 | 156 |
putative enzymes found at P > 0.9 | 84 | 71 | 82 |
fillers with borderline P (0.5 to 0.9) | 37 | 17 | 11 |
holes with no BLAST hits | 8 | 7 | 7 |
holes filled with ORFs at P > 0.8 | 9 | 2 | 6 |
newly completed pathways at P > 0.9 | 18 | 17 | 17 |
newly completed pathways at P > 0.8 | 20 | 14 | 17 |