Table 6 Comparison of selected examples from Reed et al. method.
From: A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
E.C.# | Bnumber | MAST E-value | HMMER E-value | P(has function) | best-E-value | average-rank | avg-frac-aligned | pathway-directon | adjacent-rxns |
|---|---|---|---|---|---|---|---|---|---|
1.2.7.1 | b1378 | 6e-8 | 3e-16 | 0.18 | 1e-36 | 2.5 | 0.75 | F | F |
2.8.1.2 | b1757 | 2e-4 | 4e-12 | 0.05 | 7e-16 | 2.0 | 0.92 | F | F |
3.2.1.68 | b3431 | 1e-11 | 4e-9 | 0.97 | 2e-69 | 1.0 | 0.74 | T | F |