Table 1 SNP annotation of human chromosome 6p21
From: Target SNP selection in complex disease association studies
total genes examined | 396 |
|---|---|
Total SNP number (mean 49/gene, range 1–463) | 19,495 |
SNPs inside of a motif | 2,562 |
total motifs touched | 5,547 |
SNPs inside of transcription factor site | 4,893 |
SNPs that deleted a binding site | 3,053 |
SNPs that inserted a binding site | 1,816 |
SNPs inside of exon-intron boundary of all known transcripts | 44 |
SNPs leading to amino acid exchange | 310 |
Ala>Thr | 15 |
Glu>Lys | 11 |
Arg>Gln | 10 |
SNPs inside of exon splice enhancer motif | 299 |
3C | 80 |
5C3D | 73 |
5B3A | 39 |