Table 5 Class I vs Class II (cf. legend of table 3).
From: Detection of transposable elements by their compositional bias
HMM state | A. thaliana | |||
|---|---|---|---|---|
E1 | CT (0.46) | CA (0.36) | AT (-0.28) | AC (0.22) |
E2 | CT (0.52) | TG (-0.30) | GA (-0.20) | AG (-0.16) |
E3 | TC (0.50) | CC (0.39) | AT (-0.24) | GG (-0.23) |
I | CC (2.81) | CG (2.58) | TT (-1.94) | GC (1.56) |
HMM state | C. elegans | |||
E1 | TG (-1.37) | CT (0.97) | GG (-0.91) | CG (-0.84) |
E2 | GA (-1.62) | GG (-0.95) | GT (-0.71) | TC (0.69) |
E3 | TA (1.01) | CC (0.73) | GT (-0.66) | AT (-0.58) |
I | TT (-1.75) | CG (1.00) | GG (0.94) | CC (0.87) |
HMM state | D. melanogaster | |||
E1 | TT (-1.28) | CC (0.91) | AA (-0.72) | AT (-0.70) |
E2 | TT (-0.76) | GC (0.69) | CT (0.65) | GG (0.60) |
E3 | CC (0.89) | AT (-0.82) | TT (-0.79) | GG (0.75) |
I | CA (0.87) | AC (0.85) | TT (-0.79) | CC (0.78) |