Figure 6
From: Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
3D matching for xyna-psefl xynz-clotm using SPDBV magic fit. 3D images of fit obtained by using SPDBV [30, 31] software's "magic fit" tools. The first value in the bracket is the SSS for the subsequence and second refers to rms value obtained by the tool in 0A. Color red is used for xyna-psefl and green for xynz-clotm. The subsequences for which structures are shown are (a) NCNTFVMW & RRGGITVW (b) RDSLLAVM & ENGAKTTA (c) YNSILQRE & RQSVFYRQ belonging to xynz-clotm and xyna-psefl respectively. All the subsequences found to be similar are left by traditional algorithms as dissimilar (or unidentical). Interestingly, the subsequences paired up in fig 6b and 6c are not aligned by BLAST but were still found to be similar by SSS and are captured by the same.