Figure 7
From: Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
3D matching for xyna-theau xyna-strli using SPDBV magic fit. 3D images of fit obtained by using SPDBV [30, 31] software's "magic fit" tools. The first value in the bracket is the SSS for the subsequence and second refers to rms value obtained by the tool in 0A. Color red is used for xyna-theau and green for xyna-strli. Subsequences for which structures are shown are (a) TTPLLFDG & QTPLLFNN (b) SQTHLSAG & FQSHFNSG (c) VLQALPLL & YNSNFRTT belonging to xyna-theau and xyna-strli respectively. Fig 7a shows a structure refering to matching subsequences that shows that SSS is able to capture subsequences like traditional algorithms also, though it is also capable of picking subsequences like in fig 7c that are not similar on the basis of amino acid characters.