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Table 1 Summary of mapping cDNA microarray features to probes on Affymetrix gene-chips.

From: Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

 

NCI-60 – HuFL

Brc 8k – HuFL

Brc8k – U95Av2

Lung – U95Av2

Total cDNA clones

9707

8820

8820

22691

Clones with both reads sequenced

6222

7015

7015

18645

Clones with predicted insert region

4639

6354

6354

14813

Total Probe-sets defined

1765

2403

3103

4597

Total (perfect match) probes on Affymetrix platform

131541

131541

199084

199084

Total mapped probes

26347

37559

48250

70001

Probes mapped to multiple clones

904

3224

4019

26765

Number of probe-sets with > 1 Affymetrix "probe-set" represented

115

310

664

888