Skip to main content

Table 2 Calibration factors for three evolutionary models

From: Scoredist: A simple and robust protein sequence distance estimator

 

c

Dayhoff

1.3370

JTT

1.2873

MV

1.1775

  1. The raw distance d r is scaled by the calibration factor c, which was obtained by least squares fitting of 2000 artificial protein sequence alignments generated for the matrices as given by Dayhoff, JTT (Jones-Taylor-Thornton), and MV (Müller-Vingron).
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us