Table 3 Consensus binding sites corresponding to GO terms in the cellular component branch of the Gene Ontology. For each GO term we display either the consensus sequence obtained from wconsensus, or the longest motif associated to the term if the consensus sequence was not significant enough as defined in the text. The third column is the logarithm of the expected frequency of the alignment as given by wconsensus, if exists. The fourth column contains the number A of motifs which were used in the alignment and the total number B of motifs associated to the term in the format A/B. For this table the data obtained with PAM1 and PAM10 are considered together.
actin cytoskeleton | AGGAC | - | 1/1 |
|---|---|---|---|
chromatin | GGCTC | -9,99174 | 3/3 |
chromosome | GGCGGGAA | - | 1/2 |
chromosome\, pericentric region | CAAATAGA | - | 1/1 |
clathrin-coated vesicle | ATGGCA | - | 1/1 |
collagen | GGACC | - | 1/1 |
COPI-coated vesicle | CTCAGAG | - | 1/1 |
cytosol | CGAAAGC | - | 1/2 |
cytosolic large ribosomal subunit (sensu Eukarya) | CGGAGGAG | - | 1/3 |
cytosolic ribosome (sensu Eukarya) | TTTCCG | -11,6127 | 4/5 |
endoplasmic reticulum | GACGTGGC | - | 1/4 |
eukaryotic 43S preinitiation complex | CGGAAAA | - | 1/2 |
eukaryotic 48S initiation complex | GGGCGGAA | - | 1/1 |
eukaryotic translation initiation factor 3 complex | CACCTCCG | - | 1/4 |
external encapsulating structure | GTATCTA | - | 1/1 |
extracellular matrix | CAAATG | - | 1/2 |
extracellular space | GGGAA | - | 1/1 |
fibrillar collagen | ACCCT | - | 1/1 |
Golgi lumen | CAACAT | -8,99019 | 3/4 |
heterogeneous nuclear ribonucleoprotein complex | AATGGCG | - | 1/4 |
inner membrane | ACCGGCT | - | 1/1 |
integral to membrane | ATCTCTG | - | 1/4 |
integral to nuclear inner membrane | ACCTGAG | - | 1/2 |
intracellular | CGGAAGCG | -23,1425 | 5/15 |
lytic vacuole | GATTCA | - | 1/1 |
membrane | CCTGGC | - | 1/6 |
minor (U12-dependent) spliceosome complex | ATTGCG | - | 1/1 |
mitochondrial inner membrane presequence translocase complex | ACGGGAA | - | 1/2 |
mitochondrion | AAGTTGC | - | 1/2 |
muscle fiber | CCTCAG | - | 1/1 |
muscle myosin | CAGAG | - | 1/1 |
muscle thin filament tropomyosin | TCCTCCA | - | 1/1 |
nuclear chromatin | ATTGAG | - | 1/1 |
nucleosome | GGCTCT | -85,6578 | 28/45 |
nucleus | CACCAATC | - | 1/5 |
plasma membrane | CTCCC | - | 1/1 |
replisome | TCCCGCCA | - | 1/1 |
ribonucleoprotein complex | CSGAA | -18,8768 | 6/8 |
ribosome | CGTGTAG | - | 1/3 |
sarcomere | AGCAGG | - | 1/2 |
small ribosomal subunit | GGCGGAA | - | 1/2 |
synaptic vesicle | ACCAGAAT | - | 1/1 |
synaptonemal complex | GGTCTTA | - | 1/1 |
vesicle coat | ACTGCCT | - | 1/1 |
voltage-gated calcium channel complex | CCTCCC | - | 1/1 |