Table 4 Consensus binding sites corresponding to GO terms in the molecular function branch of the Gene Ontology. For each GO term we display either the consensus sequence obtained from wconsensus, or the longest motif associated to the term if the consensus sequence was not significant enough as defined in the text. The third column is the logarithm of the expected frequency of the alignment as given by wconsensus, if exists. The fourth column contains the number A of motifs which were used in the alignment and the total number B of motifs associated to the term in the format A/B. For this table the data obtained with PAM1 and PAM10 are considered together.
calcium-activated potassium channel activity | GCCACA | - | 1/1 |
|---|---|---|---|
chemoattractant activity | GAATTTCC | - | 1/1 |
G-protein coupled receptor activity | AATAG | - | 1/1 |
ligand-dependent nuclear receptor activity | CAGGG | - | 1/1 |
nucleic acid binding | CGGGAG | - | 1/2 |
pancreatic ribonuclease activity | AACTACTC | - | 1/1 |
phosphatidylinositol-4\, 5-bisphosphate 3-kinase activity | AAGGA | - | 1/1 |
retinoic acid receptor activity | ACCCA | - | 1/1 |
RNA binding | ATGGCG | - | 1/1 |
serine-type endopeptidase activity | CAGAGGG | - | 1/1 |
single-stranded DNA binding | AAACC | - | 1/1 |
surfactant activity | ACTCACCC | - | 1/1 |
translation factor activity\, nucleic acid binding | CGGAAG | - | 1/1 |
uncoupling protein activity | GACGTAGC | - | 1/1 |