Table 1 Manual verses automatically determined thresholdsa
From: Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Protein family | PDB ID | Manual PSZ | Auto PSZ |
|---|---|---|---|
Acetyglucosamine-6-phoshate deacyetylase | 1O12 | -2.20 | -2.25 |
Alcohol dehydrogenase | 1JVB | -2.20 | -2.15 |
CuZnSOD | 1SPD | -1.50 | -1.50 |
Cytochrome P450 | 1N4G | -2.20 | -2.10 |
Enolase | 2ONE | -2.00 | -2.18 |
Glyceroladhyde-3-phosphate dehydrogenase | 1DC4 | -1.80 | -1.90 |
Glycerol kinase | 1B05 | -2.00 | -2.03 |
Glutamate dehydrogenase | 1HWZ | -1.80 | -2.12 |
Inorganic pyrophosphatase | 1I6T | -1.80 | -1.67 |
Myoglobin | 1MBA | -1.50 | -1.51 |
Succinate dehydrogenase – FAD | 1NEK | -2.00 | -2.20 |
Succinate dehydrogenase – Fe/S | 1NEK | -2.20 | -1.63 |
Succinate dehydrogenase – Heme | 1NEK | -2.20 | -1.88 |
TATA box binding protein | 1TBP | -1.50 | -2.16 |
Triosephosphate isomerase | 7TIM | -1.50 | -1.85 |