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Table 1 Manual verses automatically determined thresholdsa

From: Predicting functional sites with an automated algorithm suitable for heterogeneous datasets

Protein family PDB ID Manual PSZ Auto PSZ
Acetyglucosamine-6-phoshate deacyetylase 1O12 -2.20 -2.25
Alcohol dehydrogenase 1JVB -2.20 -2.15
CuZnSOD 1SPD -1.50 -1.50
Cytochrome P450 1N4G -2.20 -2.10
Enolase 2ONE -2.00 -2.18
Glyceroladhyde-3-phosphate dehydrogenase 1DC4 -1.80 -1.90
Glycerol kinase 1B05 -2.00 -2.03
Glutamate dehydrogenase 1HWZ -1.80 -2.12
Inorganic pyrophosphatase 1I6T -1.80 -1.67
Myoglobin 1MBA -1.50 -1.51
Succinate dehydrogenase – FAD 1NEK -2.00 -2.20
Succinate dehydrogenase – Fe/S 1NEK -2.20 -1.63
Succinate dehydrogenase – Heme 1NEK -2.20 -1.88
TATA box binding protein 1TBP -1.50 -2.16
Triosephosphate isomerase 7TIM -1.50 -1.85
  1. a A sequence window width of 5 is used for each of the above examples and gap range of {-1: -2}.