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Table 2 Comparative analysis of literature mining tools. Eleven known p53 target genes were analyzed using five methods. The numbers represent the number of reoccurrences of each gene with the term "P53".

From: MILANO – custom annotation of microarray results using automatic literature searches

Gene Id

Primary Symbol

MILANO – GeneRIFa

MILANO – Medlinea

PubMatrixb

BEAR GeneInfoa[17]

MicroGeniec

1026

CDKN1A

74

4180

49

50

3058

1647

GADD45A

7

281

21

45

313

2810

SFN

2

25

25

25

0

3486

IGFBP3

1

42

36

42

36

355

TNFRSF6

25

740

418

43

707

4583

MUC2

2

29

29

29

29

4609

MYC

21

1715

1715

1715

1715

5111

PCNA

13

1269

1173

3671

1173

59

ACTA2

1

0

0

0

0

7520

XRCC5

1

52

42

42

583

9618

TRAF4

2

1

1

1570

326

  1. aThe search was performed with LocusLink ids as the primary search terms.
  2. bThe search was performed with the primary gene symbols as the primary search terms.
  3. cThe search was performed with UniGene ids as the primary search terms.
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BMC Bioinformatics

ISSN: 1471-2105

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