Figure 1
From: arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays
arrayCGHbase scheme. The data is stored in a MIAME supportive MySQL database (red) and reporter info is updated using the NCBI, Ensembl and UCSC genome database. Data and results are presented to the user through a web browser via the PHP scripting language. Data-normalization and other analysis or result visualization methods can be integrated using the plug-in architecture. Further data processing using the R statistical scripting language will be implemented in the near future. Results can be exported to a Progenetix or MIAME compatible format, or visualized on the genome using the Ensemble or UCSC genome browser.