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Table 1 Analysis of the scores. Average scores for different categories of substitutions. The stop codons are excluded from this analysis.

From: Empirical codon substitution matrix

  n Substitutions Avg. Score
Identity 61 12.9
Synonymous: all 87 8.7
Synonymous: 1 base change 67 10.0
Synonymous: 2 base changes 14 6.6
Synonymous: 3 base changes 6 -1.7
Non-syn.: all 1743 -7.3
Non-syn.: 1 base change 196 -1.3
Non-syn.: 2 base changes 770 -5.9
Non-syn.: 3 base changes 777 -10.3
All Substitutions 1891 -5.9