Table 2 Range of applicability. Ratios of likelihood scores for amino acid and codon based alignments for orthologs between several species pairs, where N is the number of orthologs used.
N | Avg. PAM | Scores ratio | |
|---|---|---|---|
Homo sapiens | |||
vs. Mus musculus | 14655 | 17.4 | 1.150 |
vs. Gallus gallus | 9272 | 29.3 | 1.060 |
vs. X. tropicalis | 9953 | 39.1 | 1.026 |
vs. B. rerio | 7507 | 43.7 | 1.013 |
Drosophila melanogaster | |||
vs. A. gambiae | 5059 | 57.3 | .995 |
vs. H. sapiens | 3371 | 77.5 | .959 |
vs. C. elegans | 2156 | 88.8 | .945 |
Saccharomyces cerevisiae | |||
vs. C. glabrata | 3467 | 52.7 | 1.002 |
vs. A. gossypii | 2909 | 61.4 | .978 |
vs. H. sapiens | 1187 | 94.1 | .931 |
Escherichia coli | |||
vs. E. coli strain O6 | 3156 | 2.0 | 1.323 |
vs. Salmonella typhi | 2557 | 14.2 | 1.067 |
vs. P. aeruginosa | 1234 | 71.6 | .980 |
vs. B. japonicum | 765 | 90.2 | .959 |