Table 1 AutoFACT annotation classes
From: AutoFACT: An Auto matic F unctional A nnotation and C lassification T ool
Annotation Class | Hit to LSU or SSU rRNA database | Hit to UniRef, nr, KEGG and/or COG | Hit is inform-ative | Hits share common inform-ative terms | Hit to Pfam or Smart | Hit to est_others |
|---|---|---|---|---|---|---|
"Ribosomal RNA" | YES | N/A | N/A | N/A | N/A | N/A |
" [Functionally Annotated] protein" | NO | YES | YES | YES | N/A | N/A |
"Unassigned protein" | NO | YES | YES/NO | NO | NO | N/A |
" [Domain name]-containing protein" | NO | YES/NO | NO | NO | YES | N/A |
"Unknown EST" | NO | NO | N/A | N/A | NO | YES |
"Unclassified" | NO | NO | N/A | N/A | NO | NO |