Table 2 Databases searched and classification information assigned by AutoFACT
From: AutoFACT: An Auto matic F unctional A nnotation and C lassification T ool
Database | Classification Information | Reference |
|---|---|---|
European Ribosomal Database | Large subunit (LSU) ribosomal RNAs Small subunit (SSU) ribosomal RNAs | [25] |
Uniprot's UniRef 90 | GeneOntology terms Enzyme Commission numbers Locus names | [16,26] |
Uniprot's UniRef100 | ||
Clusters of Orthologous Groups (COG) | Functional categories | [27,28] |
Kyoto Encyclopedia of Genes and Genomes (KEGG) | Metabolic pathways Enzyme Commission numbers Locus names | [29,30] |
Protein Familes Database (Pfam) | Protein domains | [31] |
Smart | Signaling domains Domain architectures | [32] |
NCBI's non-redundant database (nr) | N/A | [33] |
NCBI's est_others database |