Table 2 Sensitivity (sens) and Specificity (spec) (in %) on Park and Kanehisa's dataset [21]. First two columns show results from Park and Kanehisa's algorithm [21] obtained by 5-fold crossvalidation. The next column shows results from Chou and Cai's work [8] obtained using leave one out test. The last set of results are from our algorithm obtained using 5-fold and 10-fold crossvalidation.
Subcellular | P & K | P & K | Chou Cai | pSLIP | |||
|---|---|---|---|---|---|---|---|
Location | 5-fold | 5-fold | LOO-CV | 5-fold | 10-fold | ||
sens | sens | sens | spec | sens | spec | sens | |
Chloroplast | 72.3 | 70.3 | 93.9 | 89.9 | 84.8 | 93.5 | 92.4 |
Cytoplasmic | 72.2 | 73.9 | 91.5 | 86.2 | 84.1 | 91.6 | 87.7 |
Cytoskeleton | 58.5 | 59.8 | 80.0 | - | - | - | - |
ER | 46.5 | 39.0 | 90.3 | - | - | - | - |
Extracellular | 78.0 | 77.1 | 90.0 | 96.3 | 92.0 | 98.4 | 93.7 |
Golgi Apparatus | 14.6 | - | 76.6 | - | - | - | - |
Lysosomal | 61.8 | 62.4 | 92.5 | - | - | - | - |
Mitochondrial | 57.4 | 53.5 | 83.6 | 75.9 | 86.8 | 85.7 | 93.5 |
Nuclear | 89.6 | 89.0 | 95.3 | 89.4 | 90.4 | 93.1 | 93.1 |
Peroxisomal | 25.6 | - | 82.4 | - | - | - | - |
Plasma Membrane | 92.2 | 91.9 | 95.0 | 95.1 | 94.1 | 95.0 | 97.0 |
Vacuolar | 25.0 | - | 66.7 | - | - | - | - |
TA | 78.2 | 79.1 | 92.4 | 89.5 | 93.1 | ||
LA | 57.9 | 68.5 | - | 88.7 | 92.9 | ||