Figure 5From: Multiple sequence alignments of partially coding nucleic acid sequencesHogeweg mountain plots of conserved RNA structures in Levivirus genomes. Above: ClustalW, below: codaln. Colors indicate the number of consistent mutations: red 1, ochre 2, green 3, turquoise 4, blue 5; Saturated colors indicate that there are only sequences that are compatible to the structure prediction. Decreasing saturation of the colors indicates 1 or 2 non-compatible sequences. The thickness of the slabs is proportional to the average frequency of the base pair in the thermodynamic equilibrium. For further details see [3].Back to article page