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Table 2 Comparison of sorted class list against GENERATOR clustering with H2O2 dataset. The table shows the sorted list of over-represented functional classes for H2O2 dataset. Only the 25 best scoring classes are shown to limit the size. Columns indicate the obtained log-p-values (O.log(p)), class names and its rank in the list, and the corresponding GENERATOR cluster number, if the class was included into the obtained GENERATOR result. Notice that the most of the functional classes are associated with mitochondrial ribosome proteins. Detailed results are shown in table 7 [see Additional file 7].

From: Theme discovery from gene lists for identification and viewing of multiple functional groups

Rank Class name O.log(p) In cluster
1 Mitochondrion 40.06 first level
2 mitochondrial matrix 30.45 II
3 organellar ribosome 26.09 II
4 mitochondrial ribosome 26.09 II
5 protein biosynthesis 21.69 II
6 organellar large ribosomal subunit 18.61 II
7 mitochondrial large ribosomal subunit 18.61 II
8 macromolecule biosynthesis 15.6 not reported
9 structural constituent of ribosome 14.84 II
10 Ribosome 14.53 II
11 Biosynthesis 13.15 not reported
12 structural molecule activity 12.87 not reported
13 ribonucleoprotein complex 12.52 II
14 protein metabolism 12.34 not reported
15 Metabolism 11.75 not reported
16 large ribosomal subunit 11.33 not reported
17 organellar small ribosomal subunit 7.94 not reported
18 mitochondrial small ribosomal subunit 7.94 not reported
19 aerobic respiration 7.3 IV
20 cellular respiration 7.03 not reported
21 Cytoplasm 7.02 not reported
22 RNA ligase activity 6.68 III
23 tRNA ligase activity 6.68 III
24 ligase activity, forming aminoacyl-tRNA and related compounds 6.68 III
25 ligase activity, forming carbon-oxygen bonds 6.68 III
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