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Figure 3 | BMC Bioinformatics

Figure 3

From: Species-specific analysis of protein sequence motifs using mutual information

Figure 3

Construction of distance matrix D(r,s) (b) in our case of k = 6 groups by calculating each mean of all pairwise MI-profiles (a). r and s are placeholder of the user-applied classification labels, where D(r,s) is the distance of a group of sequences labeled r to a group of sequences labeled s and visa verse. By applying hierarchical clustering with the complete linkage method to D a phylogenetic tree reflecting the distances can be constructed (c).

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