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Table 2 A list of parameter values used in the simulations

From: Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach

Distribution

binomial (i.e. no overdispersion); beta-binomial; negative-binomial

overdispersion parameter (φ)

8e-06, 2e-05, 4.3e-05 for beta-binomial; 0.17, 0.42, 0.95 for negative binomial

number of samples in groups A and B

5 in each group

mean proportion in group A (p A )

1, 5, 10, 20, 50, and 100 out of 50,000

ratio of mean proportions (p B / p A )

1, 2 and 4

  1. Note: the library sizes are 66148, 67094, 53338, 80124, 64984, 70452, 74052, 60086, 52966 and 45377, each of which was determined by a draw from a uniform distribution over the interval from 30,000 to 90,000.