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Table 5 A set of genes identified as significantly differentially expressed (p < 0.05 and also among the list of top 100 genes) according to the log-t test but not by the logit-t test (p > 0.05)

From: Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach

   

Normal

Cancer

Tag

P (log-t)

P (logit-t)

HX

H126

ASPC

PL45

CAPAN1

CAPAN2

Panc-1

AGCAGATCAG*

0.003

0.088

16

9

272

152

138

135

384

TTGGTGAAGG

0.003

0.069

6

0

90

267

194

187

238

CCCATCGTCC

0.003

0.309

13

34

2047

1333

364

456

408

CCTCCAGCTA

0.006

0.465

3

16

452

1766

292

265

364

ACTTTTTCAA

0.008

0.096

25

43

413

379

226

200

65

CAAACCATCC*

0.01

0.463

9

9

439

1235

154

143

133

TGCCCTCAGG

0.011

0.219

16

6

80

196

276

339

4

GCTGTTGCGC*

0.011

0.151

3

3

35

30

82

126

133

GACATCAAGT*

0.013

0.554

0

0

183

548

85

126

20

TTCACTGTGA

0.014

0.149

0

3

128

105

77

91

16

TTGGGGTTTC

0.015

0.142

69

37

701

507

173

195

230

TGCCCTCAAA

0.016

0.246

3

6

32

112

135

178

0

GGGGAAATCG

0.017

0.066

100

71

339

423

119

291

226

  1. Note: Tag counts have been converted to number of tags per 100,000 for the comparison purpose. This scaling is not used in any statistical tests. Tags with (*) are those also identified by Ryu et al. [12].
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BMC Bioinformatics

ISSN: 1471-2105

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