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Table 4 Blastn similarities to MPrime computed oligos. 1mRNA sequence from which the RefSeq sequence was derived.

From: MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays

Gene name

GenBank identifier

Score (bits)

Notes

GAPDH

47607489

139

RefSeq entry for GAPDH

Actb

6671508

139

RefSeq entry for Actb

 

498651

139

mRNA for beta actin

 

26104752

139

beta actin cDNA

 

191660

139

Mouse A-X beta actin mRNA

 

22316184

99.6

Chromosome X genomic sequence

Sdf4

46195814

139

RefSeq entry for Sdf4

 

475687541

139

mRNA for Sdf4

 

21953005

139

Chromosome 4 genomic sequence

 

26097254

131

Unknown EST

Ubb

6755918

139

RefSeq entry for Ubb

 

551771

139

mRNA for Ubb

Ywhaz

31981422

139

RefSeq entry for Ywhaz

 

297480011

139

mRNA for Ywhaz

 

1304165

139

mRNA for phosholipase A2

Hprt

7305154

139

RefSeq entry for Hprt

 

1939841

139

mRNA for Hprt

 

38348687

139

Chromosome X genomic sequence

Tubd1

9790052

139

RefSeq entry for Tubd1

 

58137751

139

mRNA for Tubd1

 

17221230

139

Chromosome 11 genomic sequence

Tuba1

6755900

139

RefSeq entry for Tuba1

 

2022071

139

mRNA for Tuba1

 

202222

139

Tuba1 gene, 3' end

Ppicap

6755143

139

RefSeq entry for Lgals3bp (Ppicap pseudonym)

 

2970321

139

mRNA for mama

 

17017768

139

Chromosome 11 genomic sequence

 

26348284

139

Ppicap cDNA

 

397799

139

CyCAP mRNA

Hspca

42476088

139

RefSeq entry for Hspca

 

128359861

139

Hspca mRNA

Htf9c

6680314

139

RefSeq entry for Htf9c

 

3189761

139

Htf9c mRNA

 

3818382

139

Chromosome 16 genomic sequence