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Figure 3 | BMC Bioinformatics

Figure 3

From: Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein

Figure 3

DNA binding specificities for six DNA sites for zif268 and its five derivatives. A: four-dimensional table representing binding specificities for all DNA sites and zinc finger proteins in this study. It is converted from Table 4 by normalization to a sum of 1000; B: 2D table of combinations for the interaction of the amino acid at position -1 with the base-pair at position 9; C: 2D table of combinations for the interaction of the amino acid at position +3 with the binding site position 8; D: 2D table of combinations between amino acids at position -1 and +3; E: 2D table of combinations between DNA bases at position 8 and 9; F: 2D table of combinations between amino acid position 3 and base position 9; G: 2D table of combinations between amino acid position -1 and base position 8.

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