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Table 1 Distribution of class A flexible patterns in genomes.

From: Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"

 

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2

3

4

5

6

7

8

9

10

 

Aeropyrum pernix

X

 

X

X

      

Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales

Sulfolobus solfataricus

X

 

X

X

X

     

Archaea; Crenarchaeota; Thermoprotei; Sulfolobales

Sulfolobus tokodaii

  

X

X

X

     

Archaea; Crenarchaeota; Thermoprotei; Sulfolobales

Pyrobaculum aerophilum

 

X

       

X

Archaea; Crenarchaeota; Thermoprotei; Thermoproteales

Archaeoglobus fulgidus

  

X

X

X

     

Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales

M. Acetivorans

X

 

X

X

X

 

X

X

  

Archaea; Euryarchaeota; Methanosarcinales

Halobacterium sp.

  

X

       

Archaea; Euryarchaeota; Halobacteriales

M. thermoautotrophicum

  

X

X

      

Archaea; Euryarchaeota; Methanobacteriales

Methanococcus jannashii

X

  

X

X

     

Archaea; Euryarchaeota; Methanococcales

Pyrococcus abyssi

  

X

X

X

     

Archaea; Euryarchaeota; Thermococcales

Pyrococcus furiosus

X

 

X

X

X

     

Archaea; Euryarchaeota; Thermococcales

Pyrococcus horikoshii

  

X

X

X

     

Archaea; Euryarchaeota; Thermococcales

Thermoplasma acidophilum

   

X

 

X

    

Archaea; Euryarchaeota; Thermoplasmatales

Tropheryma whipplei

 

X

X

     

X

 

Bacteria; Actinobacteria; Actinomycetales

Aquifex aeolicus

X

  

X

    

X

 

Bacteria; Aquificae; Aquificales

Chlorobium tepidum

X

     

X

   

Bacteria; Chlorobi; Chlorobiales

Synechocystis sp.

          

Bacteria; Cyanobacteria; Chroococcales

Deinococcus radiodurans

 

X

     

X

  

Bacteria; Deinococcus-Thermus; Deinococcales

Bacillus subtilis

X

      

X

  

Bacteria; Firmicutes; Bacillales

Oceanobacillus iheyensis

X

         

Bacteria; Firmicutes; Bacillales

Listeria monocytogenes

X

    

X

    

Bacteria; Firmicutes; Bacillales

T. Tengcongensis

X

 

X

       

Bacteria; Firmicutes; Clostridia; Thermoanaerobacteriales

Streptococcus pneumoniae

X

         

Bacteria; Firmicutes; Lactobacillales

Pirellula sp.

X

         

Bacteria; Planctomycetes; Planctomycetales

Magnetactic cocci

 

X

       

X

Bacteria; Proteobacteria

Caulobacter vibrioides

 

X

        

Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacteriales

Agrobacterium tumefaciens

 

X

     

X

  

Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

Sinorhizobium meliloti

       

X

  

Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales

Rickettsia conorii

X

 

X

   

X

   

Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsialles

Rickettsia prowozekii

X

X

X

 

X

 

X

   

Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsialles

Bordetella pertussis

X

     

X

   

Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales

Neisseria meningitidis

 

X

        

Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales

Campylobacter jejuni

X

X

        

Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales

Helicobacter hepaticus

X

X

X

X

      

Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales

Helicobacter pylori

 

X

X

   

X

   

Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales

Wolinella succinogenes

 

X

X

 

X

     

Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales

P. haloplanktis

 

X

    

X

   

Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales

Candidatus bl. floridanus

X

         

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales

Buchnera aphidicola

X

         

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales

Escherichia coli

 

X

        

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales

Wigglesworthia glossinidia

X

         

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales

Coxiella burnetii

X

         

Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales

Haemophilus influenzae

X

X

  

X

X

X

   

Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales

Pseudomonas aeruginosa

 

X

     

X

  

Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales

Pseudomonas putida

X

X

    

X

X

  

Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales

Vibrio vulnificus

 

X

   

X

X

   

Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales

Xylella fastidiosa

X

X

  

X

X

 

X

  

Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales

Leptospira interrogans

X

         

Bacteria; Spirochaetes; Spirochaetales

Thermotoga maritima

X

       

X

 

Bacteria; Thermotogae; Thermotogales

Plasmodium falciparum

          

Eukaryota; Alveolata; Apicomplexa

Saccharomyces cerevisiae

X

   

X

     

Eukaryota; Fungi; Ascomycota

Encephalitozoon cuniculi

          

Eukaryota; Fungi; Microsporidia

Caenorhabditis elegans

X

 

X

 

X

     

Eukaryota; Metazoa; Nematoda

Enterobacteria phage T4

X

         

Virus; Enterobacteria phage T4

S. tengcon.. Vvrus STSV1

X

         

Virus; Fusellovirus

Human herpesvirus 4

          

Virus; Human herpesvirus 4

  1. 1. A xxxxT xxxxA xxxxTT xxxxxA xxxxT xxxxA
  2. 2. G xxxxTT xxxC xxxT
  3. 3. TT xxxG xxxTT xxxxG xxxxTT
  4. 4. T xxxxAG xxxTT xxxxxxxxT
  5. 5. T xxxxxxxxxxT xxxGA xxxTT
  6. 6. C xxxxxTT xxxC xxxxxxT
  7. 7. T xxxGC xG xT
  8. 8. T xxC xG xC xTT
  9. 9. G xxxxxT xxxxxA xxxxxT
  10. 10. TTT xxxCA xxxxxT