From: Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
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Aeropyrum pernix | X | Â | X | X | Â | Â | Â | Â | Â | Â | Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales |
Sulfolobus solfataricus | X | Â | X | X | X | Â | Â | Â | Â | Â | Archaea; Crenarchaeota; Thermoprotei; Sulfolobales |
Sulfolobus tokodaii | Â | Â | X | X | X | Â | Â | Â | Â | Â | Archaea; Crenarchaeota; Thermoprotei; Sulfolobales |
Pyrobaculum aerophilum | Â | X | Â | Â | Â | Â | Â | Â | Â | X | Archaea; Crenarchaeota; Thermoprotei; Thermoproteales |
Archaeoglobus fulgidus | Â | Â | X | X | X | Â | Â | Â | Â | Â | Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales |
M. Acetivorans | X | Â | X | X | X | Â | X | X | Â | Â | Archaea; Euryarchaeota; Methanosarcinales |
Halobacterium sp. | Â | Â | X | Â | Â | Â | Â | Â | Â | Â | Archaea; Euryarchaeota; Halobacteriales |
M. thermoautotrophicum | Â | Â | X | X | Â | Â | Â | Â | Â | Â | Archaea; Euryarchaeota; Methanobacteriales |
Methanococcus jannashii | X | Â | Â | X | X | Â | Â | Â | Â | Â | Archaea; Euryarchaeota; Methanococcales |
Pyrococcus abyssi | Â | Â | X | X | X | Â | Â | Â | Â | Â | Archaea; Euryarchaeota; Thermococcales |
Pyrococcus furiosus | X | Â | X | X | X | Â | Â | Â | Â | Â | Archaea; Euryarchaeota; Thermococcales |
Pyrococcus horikoshii | Â | Â | X | X | X | Â | Â | Â | Â | Â | Archaea; Euryarchaeota; Thermococcales |
Thermoplasma acidophilum | Â | Â | Â | X | Â | X | Â | Â | Â | Â | Archaea; Euryarchaeota; Thermoplasmatales |
Tropheryma whipplei | Â | X | X | Â | Â | Â | Â | Â | X | Â | Bacteria; Actinobacteria; Actinomycetales |
Aquifex aeolicus | X | Â | Â | X | Â | Â | Â | Â | X | Â | Bacteria; Aquificae; Aquificales |
Chlorobium tepidum | X | Â | Â | Â | Â | Â | X | Â | Â | Â | Bacteria; Chlorobi; Chlorobiales |
Synechocystis sp. | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Cyanobacteria; Chroococcales |
Deinococcus radiodurans | Â | X | Â | Â | Â | Â | Â | X | Â | Â | Bacteria; Deinococcus-Thermus; Deinococcales |
Bacillus subtilis | X | Â | Â | Â | Â | Â | Â | X | Â | Â | Bacteria; Firmicutes; Bacillales |
Oceanobacillus iheyensis | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Firmicutes; Bacillales |
Listeria monocytogenes | X | Â | Â | Â | Â | X | Â | Â | Â | Â | Bacteria; Firmicutes; Bacillales |
T. Tengcongensis | X | Â | X | Â | Â | Â | Â | Â | Â | Â | Bacteria; Firmicutes; Clostridia; Thermoanaerobacteriales |
Streptococcus pneumoniae | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Firmicutes; Lactobacillales |
Pirellula sp. | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Planctomycetes; Planctomycetales |
Magnetactic cocci | Â | X | Â | Â | Â | Â | Â | Â | Â | X | Bacteria; Proteobacteria |
Caulobacter vibrioides | Â | X | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacteriales |
Agrobacterium tumefaciens | Â | X | Â | Â | Â | Â | Â | X | Â | Â | Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales |
Sinorhizobium meliloti | Â | Â | Â | Â | Â | Â | Â | X | Â | Â | Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales |
Rickettsia conorii | X | Â | X | Â | Â | Â | X | Â | Â | Â | Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsialles |
Rickettsia prowozekii | X | X | X | Â | X | Â | X | Â | Â | Â | Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsialles |
Bordetella pertussis | X | Â | Â | Â | Â | Â | X | Â | Â | Â | Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales |
Neisseria meningitidis | Â | X | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales |
Campylobacter jejuni | X | X | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales |
Helicobacter hepaticus | X | X | X | X | Â | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales |
Helicobacter pylori | Â | X | X | Â | Â | Â | X | Â | Â | Â | Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales |
Wolinella succinogenes | Â | X | X | Â | X | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales |
P. haloplanktis | Â | X | Â | Â | Â | Â | X | Â | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales |
Candidatus bl. floridanus | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales |
Buchnera aphidicola | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales |
Escherichia coli | Â | X | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales |
Wigglesworthia glossinidia | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales |
Coxiella burnetii | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales |
Haemophilus influenzae | X | X | Â | Â | X | X | X | Â | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales |
Pseudomonas aeruginosa | Â | X | Â | Â | Â | Â | Â | X | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales |
Pseudomonas putida | X | X | Â | Â | Â | Â | X | X | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales |
Vibrio vulnificus | Â | X | Â | Â | Â | X | X | Â | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales |
Xylella fastidiosa | X | X | Â | Â | X | X | Â | X | Â | Â | Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales |
Leptospira interrogans | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Bacteria; Spirochaetes; Spirochaetales |
Thermotoga maritima | X | Â | Â | Â | Â | Â | Â | Â | X | Â | Bacteria; Thermotogae; Thermotogales |
Plasmodium falciparum | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Eukaryota; Alveolata; Apicomplexa |
Saccharomyces cerevisiae | X | Â | Â | Â | X | Â | Â | Â | Â | Â | Eukaryota; Fungi; Ascomycota |
Encephalitozoon cuniculi | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Eukaryota; Fungi; Microsporidia |
Caenorhabditis elegans | X | Â | X | Â | X | Â | Â | Â | Â | Â | Eukaryota; Metazoa; Nematoda |
Enterobacteria phage T4 | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Virus; Enterobacteria phage T4 |
S. tengcon.. Vvrus STSV1 | X | Â | Â | Â | Â | Â | Â | Â | Â | Â | Virus; Fusellovirus |
Human herpesvirus 4 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Virus; Human herpesvirus 4 |