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Table 1 Gene Ontology annotations available in Bioconductor – For the microarrays listed in this table, Bioconductor meta data packages are available. The second column gives the number of leaf nodes the third column the number of inner nodes considered when generating classifier graphs. The last column reports the ratio of probe-sets being associated with any leaf node.

From: stam – a Bioconductor compliant R package for structured analysis of microarray data

 

Species

Probe-sets

Leaf nodes

Inner nodes

Annotated

hgu133a

human

22283

1649

1049

67.6%

hgu133b

human

22645

1136

783

30.7%

hgul33plus2

human

54675

1725

1094

44.1%

hu6800

human

7129

1300

872

84.7%

hgu95av2

human

12625

1492

966

76.2%

hgu95b

human

12620

972

669

33.3%

hgu95c

human

12646

895

633

27.7%

hgu95d

human

12644

866

603

22.9%

hgu95e

human

12639

935

641

32.1%

mgu74av2

mouse

12488

1379

934

63.5%

mgu74bv2

mouse

12411

975

696

33.7%

mgu74cv2

mouse

11934

826

590

26.0%

moe430a

mouse

22690

1538

1017

61.4%

moe430b

mouse

22575

997

719

21.0%

rgu34a

rat

8799

974

689

46.0%

rgu34b

rat

8791

403

332

7.7%

rgu34c

rat

8789

439

345

8.5%

rae230a

rat

15866

1032

718

23.5%

rae230b

rat

15276

319

297

3.1%

yg98

yeast

6777

1028

667

80.8%

YEAST

yeast

5799

1030

668

99.9%