From: Automation of gene assignments to metabolic pathways using high-throughput expression data
Pathway | Number of Assignments | Max Score | Min Score | Final Score | Number of pairs (negative Pairs) |
---|---|---|---|---|---|
pentose phosphate pathway, Mycoplasma pneumoniae | 2 | 11.03 | -0.73 | 11.03 | 1(0) |
sulfate assimilation 2 | 1 | 11.02 | 11.02 | 11.02 | 1(0) |
methionine and S-adenosylmethionine synthesis | 2 | 10.45 | 7.34 | 10.45 | 1(0) |
isoleucine biosynthesis I | 12 | 10.32 | 3.00 | 10.32 | 10(0) |
valine biosynthesis | 4 | 10.14 | 4.99 | 10.14 | 6(0) |
trehalose biosynthesis | 2 | 10.02 | 9.65 | 9.65 | 1(0) |
glutamate degradation I | 1 | 9.64 | 9.64 | 9.64 | 3(0) |
arginine biosynthesis I | 1 | 9.58 | 9.58 | 9.58 | 3(0) |
chorismate biosynthesis | 2 | 9.24 | 8.19 | 9.24 | 21(0) |
glycolysis | 180 | 8.98 | 3.16 | 8.87 | 28(0) |
asparagine biosynthesis I | 4 | 8.80 | -4.88 | 8.80 | 1(0) |
trehalose anabolism | 8 | 8.80 | 0.27 | 8.80 | 6(0) |
proline biosynthesis I | 1 | 8.43 | 8.43 | 8.43 | 3(0) |
galactose metabolism | 4 | 7.91 | 4.62 | 7.91 | 6(0) |
glycine degradation III | 2 | 7.73 | 7.73 | 7.73 | 1(0) |
methylglyoxal degradation | 2 | 7.59 | 0.98 | 7.59 | 1(0) |
tRNA charging pathway | 49152 | 7.41 | 1.69 | 7.41 | 171 (2) |
glyoxylate cycle | 72 | 7.37 | 0.27 | 7.37 | 10(0) |
homoserine methionine biosynthesis | 1 | 7.33 | 7.33 | 7.33 | 1(0) |
pyruvate dehydrogenase | 2 | 6.43 | 4.33 | 6.43 | 1(0) |
removal of superoxide radicals | 4 | 5.93 | -0.45 | 5.93 | 1(0) |
aerobic glycerol degradation II | 180 | 6.19 | 1.64 | 5.58 | 28(1) |
aspartate biosynthesis II | 4 | 4.85 | 0.75 | 4.85 | 1(0) |
non-oxidative branch of the pentose phosphate pathway | 8 | 4.82 | 0.84 | 4.82 | 10(1) |
oxidative branch of the pentose phosphate pathway | 6 | 4.78 | 1.07 | 4.78 | 3(0) |
arginine biosynthesis, Bacillus subtilis | 3 | 4.55 | 2.69 | 4.55 | 34(4) |
leucine biosynthesis | 4 | 10.08 | 4.01 | 4.31 | 3(0) |
UDP-N-acetylglucosamine biosynthesis | 1 | 4.22 | 4.22 | 4.22 | 1(0) |
cysteine biosynthesis II | 2 | 4.19 | 0.94 | 4.19 | 6(0) |
tryptophan biosynthesis | 2 | 4.13 | 3.99 | 4.13 | 10(1) |
glutamate biosynthesis I | 2 | 4.08 | -4.88 | 4.08 | 1(0) |
glutathione biosynthesis | 1 | 4.03 | 4.03 | 4.03 | 1(0) |
arginine degradation I | 1 | 4.00 | 4.00 | 4.00 | 3(0) |
arginine proline degradation | 1 | 3.84 | 3.84 | 3.84 | 3(0) |
serine biosynthesis | 2 | 3.58 | -0.58 | 3.58 | 3(0) |
folic acid biosynthesis | 48 | 3.49 | 0.23 | 3.49 | 55 (12) |
histidine biosynthesis I | 1 | 2.48 | 2.48 | 2.48 | 12(2) |
purine biosynthesis 2 | 16 | 2.43 | 2.01 | 2.43 | 90 (27) |
homocysteine and cysteine interconversion | 2 | 2.35 | 2.01 | 2.35 | 3(1) |
biotin biosynthesis I | 1 | 2.27 | 2.27 | 2.27 | 3(2) |
homocysteine degradation I | 1 | 2.01 | 2.01 | 2.01 | 1(0) |
glutamate degradation VIII | 1 | 1.86 | 1.86 | 1.86 | 8(2) |
homoserine biosynthesis | 1 | 1.14 | 1.14 | 1.14 | 3(1) |
threonine biosynthesis from homoserine | 1 | 0.87 | 0.87 | 0.87 | 1(0) |
de novo biosynthesis of pyrimidine ribonucleotides | 12 | 0.14 | -0.69 | 0.14 | 43 (25) |
ornithine spermine biosynthesis | 2 | -0.24 | -2.48 | -0.24 | 3(2) |
tyrosine biosynthesis I | 2 | -0.53 | -0.58 | -0.58 | 3(1) |
glycine biosynthesis I | 2 | -0.91 | -3.60 | -0.91 | 1(1) |
UDP-glucose conversion | 4 | -1.32 | -2.04 | -1.32 | 3(2) |
ribose degradation | 2 | 8.06 | -1.74 | -1.74 | 1(1) |
phenylalanine biosynthesis I | 2 | -2.09 | -2.80 | -2.09 | 3(2) |
tryptophan kynurenine degradation | 1 | -2.46 | -2.46 | -2.46 | 1(1) |