Figure 2From: GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structuresAlignment parsed by distance matrix. The parsing of a single local alignment into geometrically consistent sub alignments is illustrated. Only five sub-alignments are shown, and consecutive aligned residue pairs belonging to the same sub-alignment are represented by a single point in order to make the plot easier to see. The secondary structure (helices in blue and strands in red) is plotted along the axis.Back to article page