TY - BOOK AU - Gusfield, D. PY - 1997 DA - 1997// TI - Algorithms on Strings, Trees, and Sequences UR - https://doi.org/10.1017/CBO9780511574931 DO - 10.1017/CBO9780511574931 ID - Gusfield1997 ER - TY - BOOK AU - Durbin, R. AU - Eddy, S. AU - Krogh, A. AU - Mitchison, G. PY - 1998 DA - 1998// TI - Biological Sequence Analysis UR - https://doi.org/10.1017/CBO9780511790492 DO - 10.1017/CBO9780511790492 ID - Durbin1998 ER - TY - CHAP AU - Bafna, V. AU - Edwards, N. PY - 2003 DA - 2003// TI - On de novo interpretation of tandem mass spectra for peptide identification BT - Proceedings of the seventh annual international conference on Computational molecular biology ID - Bafna2003 ER - TY - STD TI - Algebraic Dynamic Programming homepage[http://bibiserv.techfak.uni-bielefeld.de/adp/] UR - http://bibiserv.techfak.uni-bielefeld.de/adp/ ID - ref4 ER - TY - JOUR AU - Giegerich, R. AU - Meyer, C. AU - Steffen, P. PY - 2004 DA - 2004// TI - A Discipline of Dynamic Programming over Sequence Data JO - Science of Computer Programming VL - 51 UR - https://doi.org/10.1016/j.scico.2003.12.005 DO - 10.1016/j.scico.2003.12.005 ID - Giegerich2004 ER - TY - JOUR AU - Nussinov, R. AU - Pieczenik, G. AU - Griggs, J. AU - Kleitman, D. PY - 1978 DA - 1978// TI - Algorithms for loop matchings JO - SIAM J Appl Math VL - 35 UR - https://doi.org/10.1137/0135006 DO - 10.1137/0135006 ID - Nussinov1978 ER - TY - BOOK AU - Bellman, R. PY - 1957 DA - 1957// TI - Dynamic Programming ID - Bellman1957 ER - TY - JOUR AU - Wuchty, S. AU - Fontana, W. AU - Hofacker, I. L. AU - Schuster, P. PY - 1999 DA - 1999// TI - Complete Suboptimal Folding of RNA and the Stability of Secondary Structures JO - Biopolymers VL - 49 UR - https://doi.org/3.0.CO;2-G DO - 3.0.CO;2-G ID - Wuchty1999 ER - TY - JOUR AU - Morin, T. L. PY - 1982 DA - 1982// TI - Monotonicity and the principle of optimality JO - J Math Anal Appl VL - 86 UR - https://doi.org/10.1016/0022-247X(82)90223-2 DO - 10.1016/0022-247X(82)90223-2 ID - Morin1982 ER - TY - JOUR AU - Giegerich, R. AU - Voss, B. AU - Rehmsmeier, M. PY - 2004 DA - 2004// TI - Abstract Shapes of RNA JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh779 DO - 10.1093/nar/gkh779 ID - Giegerich2004 ER - TY - CHAP AU - Giegerich, R. PY - 2000 DA - 2000// TI - Explaining and Controlling Ambiguity in Dynamic Programming BT - Proc Combinatorial Pattern Matching UR - https://doi.org/10.1007/3-540-45123-4_6 DO - 10.1007/3-540-45123-4_6 ID - Giegerich2000 ER - TY - JOUR AU - Dowell, R. D. AU - Eddy, S. R. PY - 2004 DA - 2004// TI - Evalution of lightweight stochastic context-free grammars for RNA secondary structure prediction JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-71 DO - 10.1186/1471-2105-5-71 ID - Dowell2004 ER - TY - JOUR AU - Reeder, J. AU - Steffen, P. AU - Giegerich, R. PY - 2005 DA - 2005// TI - Effective ambiguity checking in biosequence analysis JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-153 DO - 10.1186/1471-2105-6-153 ID - Reeder2005 ER - TY - JOUR AU - Reeder, J. AU - Giegerich, R. PY - 2004 DA - 2004// TI - Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-104 DO - 10.1186/1471-2105-5-104 ID - Reeder2004 ER - TY - JOUR AU - Rehmsmeier, M. AU - Steffen, P. AU - Höchsmann, M. AU - Giegerich, R. PY - 2004 DA - 2004// TI - Fast and effective prediction of microRNA/target duplexes JO - RNA VL - 10 UR - https://doi.org/10.1261/rna.5248604 DO - 10.1261/rna.5248604 ID - Rehmsmeier2004 ER - TY - JOUR AU - Reeder, J. AU - Giegerich, R. PY - 2005 DA - 2005// TI - Consensus Shapes: an alternative to the Sankoff Algorithm for RNA consensus structure prediction JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti577 DO - 10.1093/bioinformatics/bti577 ID - Reeder2005 ER -