Figure 2

Assessment of a protein structure prediction. (A) COLORES comparison of CASP prediction T0030AB807 (coordinates from [22]) against an average structure from a set of 15 NMR experimental structures (PDB code: 1FGP) of the target sequence. The truly-local score is displayed on the left side and the pseudo-local score on the right side. The higher scores (higher local structural differences) are represented by a thicker backbone trace and colors closer to red in the spectrum, while lower scores are represented by a thinner trace and colors closer to blue. (B) The profile of different scores along the protein sequence: COLORES "truly-local" score (red) using standard values and MOLMOL "local RMS" score (blue). Scores have been normalized for a better contrast.