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Table 1 Overview of prokaryotes from several genera with their genes/transcription unit-ratio. Microorganisms that were used for model development (M) or validation (V) of the MIC- and the GSI-equation are depicted in the list.

From: Mathematical design of prokaryotic clone-based microarrays

Genus

Organism

genes/TU (R)

Model (M) or validation (V) strain

Proteobacteria Gammaproteobacteria Enterobacteriales

Escherichia coli K-12 MG1655

1.6

 
 

Escherichia coli O157:H7 EDL933

1.6

 
 

Escherichia coli CFT073

1.6

M

 

Salmonella typhi CT19

1.4

 
 

Salmonella typhimurium LT2

1.6

 
 

Yersinia pestis CO92

1.4

 
 

Shigella flexneri 2a str. 2457T

1.5

 
 

Buchnera aphidicola Sg

1.5

V

 

Wigglesworthia glossinidia

1.5

 

ProteobacteriaGammaproteobacteria Pasteurellales

Haemophilus influenzae Rd

1.7

 
 

Pasteurella multocida PM70

1.7

V

Proteobacteria Gammaproteobacteria Xanthomonadales

Xylella fastidiosa 9a5c

1.5

 
 

Xanthomonas campestris ATCC33913

1.5

V

Proteobacteria Gammaproteobacteria Vibrionales

Vibrio cholerae El Tor N16961

1.8

M

 

Vibrio parahaemolyticus RIMD2210633

1.5

 
 

Vibrio vulnificus CMCP6

1.5

 

Proteobacteria Gammaproteobacteria Pseudomonadales

Pseudomonas aeruginosa PA01

1.6

M

 

Pseudomonas putida KT2440

1.6

 

Proteobacteria Gammaproteobacteria Legionellales

Coxiella burnetii RSA 493

1.6

 

Proteobacteria Betaproteobacteria

Neisseria meningitidis Z2491

1.6

M

 

Ralstonia solanacearum GMI1000

1.6

 

Proteobacteria Epsilonproteobacteria

Helicobacter pylori 26695

2.3

M

 

Campylobacter jejuni NCTC11168

2.7

M

Proteobacteria Alphaproteobacteria

Rickettsia prowazekii Nadrid E

1.4

V

 

Sinorhizobium meliloti 1021

1.5

 
 

Agrobacterium tumefaciens C58

1.5

 
 

Brucella suis 1330

1.5

 
 

Caulobacter crescentus

1.5

 

Firmicutes Bacillales

Bacillus subtilis 168

1.6

M

 

Oceanobacillus iheyensis HTE831

1.6

 
 

Stapylococcus aureus MW2

1.6

 
 

Listeria monocytogenes EGD-e

1.8

M

 

Listeria innocua Clip11262

1.8

 

Firmicutes Clostridia

Clostridium acetobutylicum ATCC824

1.6

 
 

Clostridium tetani E88

1.6

 
 

Thermoanaerobacter tengcongensis MB4T

2.0

 

Firmicutes Lactobacillales

Lactococcus lactis IL1403

1.5

M

 

Streptococcus agalactiae 2603

1.8

 
 

Streptococcus pneumoniae R6

1.8

 
 

Lactobacillus plantarum WCFS1

1.6

M

 

Enterococcus faecalis V583

1.8

 

Firmicutes Mollicutes

Mycoplasma pneumoniae M129

2.1

M

 

Mycoplasma genitalium G37

3.1

V

 

Mycoplasma penetrans HF-2

1.6

 
 

Ureaplasma urealyticum (serovar 3)

2.1

 

Actinobacteria

Mycobacterium tuberculosis H37Rv

1.7

M

 

Corynebacterium glutamicum ATCC 13032

1.5

 
 

Streptomyces coelicolor A3(2)

1.4

 
 

Tropheryma whipplei Twist

1.9

 
 

Bifidobacterium longum NCC2705

1.3

V

Fusobacteria

Fusobacterium nucleatum ATCC25586

2.0

V

Chlamydia

Chlamydia trachomatis (serovar D)

1.6

 
 

Chlamydophila pneumoniae AR39

1.6

 

Spirochete

Borrelia burgdorferi B31

1.8

 
 

Treponema pallidum Nichols

1.9

 
 

Leptospira interrogans 56601

1.5

 

Bacteroid

Bacteroides thetaiotaomicron VPI-5482

1.8

M

Cyanobacteria

Thermosynechococcus elongatus BP-1

1.6

 
 

Nostoc sp. PCC 7120

1.2

 

Green sulfur bacteria

Chlorobium tepidum TLS

1.6

 

Deinococcus

Deinococcus radiodurans R1

1.5

V

Hyperthermophilic bacteria

Aquifex aeolicus VF5

2.1

 
 

Thermotoga maritima MSB8

3.0

V

Archae Euryarchaeota

Methanococcus jannaschii DSM2661

1.8

M

 

Pyrococcus furiosus DSM3638

2.0

M

 

Archaeoglobus fulgidus DSM4304

2.1

 
 

Thermoplasma acidophilum DSM1728

1.5

 
 

Methanosarcina acetivorans C2A

1.3

V

 

Methanosarcina mazei Goe1

1.3

 
 

Pyrococcus abyssi

2.1

 

Archae Crenarchaeota

Aeropyrum pernix K1

2.0

 
 

Sulfolobus solfotaricus P2

1.6

 
 

Pyrobaculum aerophilum IM2

1.7