From: Mathematical design of prokaryotic clone-based microarrays
Genus | Organism | genes/TU (R) | Model (M) or validation (V) strain |
---|---|---|---|
Proteobacteria Gammaproteobacteria Enterobacteriales | Escherichia coli K-12 MG1655 | 1.6 | |
Escherichia coli O157:H7 EDL933 | 1.6 | ||
Escherichia coli CFT073 | 1.6 | M | |
Salmonella typhi CT19 | 1.4 | ||
Salmonella typhimurium LT2 | 1.6 | ||
Yersinia pestis CO92 | 1.4 | ||
Shigella flexneri 2a str. 2457T | 1.5 | ||
Buchnera aphidicola Sg | 1.5 | V | |
Wigglesworthia glossinidia | 1.5 | ||
ProteobacteriaGammaproteobacteria Pasteurellales | Haemophilus influenzae Rd | 1.7 | |
Pasteurella multocida PM70 | 1.7 | V | |
Proteobacteria Gammaproteobacteria Xanthomonadales | Xylella fastidiosa 9a5c | 1.5 | |
Xanthomonas campestris ATCC33913 | 1.5 | V | |
Proteobacteria Gammaproteobacteria Vibrionales | Vibrio cholerae El Tor N16961 | 1.8 | M |
Vibrio parahaemolyticus RIMD2210633 | 1.5 | ||
Vibrio vulnificus CMCP6 | 1.5 | ||
Proteobacteria Gammaproteobacteria Pseudomonadales | Pseudomonas aeruginosa PA01 | 1.6 | M |
Pseudomonas putida KT2440 | 1.6 | ||
Proteobacteria Gammaproteobacteria Legionellales | Coxiella burnetii RSA 493 | 1.6 | |
Proteobacteria Betaproteobacteria | Neisseria meningitidis Z2491 | 1.6 | M |
Ralstonia solanacearum GMI1000 | 1.6 | ||
Proteobacteria Epsilonproteobacteria | Helicobacter pylori 26695 | 2.3 | M |
Campylobacter jejuni NCTC11168 | 2.7 | M | |
Proteobacteria Alphaproteobacteria | Rickettsia prowazekii Nadrid E | 1.4 | V |
Sinorhizobium meliloti 1021 | 1.5 | ||
Agrobacterium tumefaciens C58 | 1.5 | ||
Brucella suis 1330 | 1.5 | ||
Caulobacter crescentus | 1.5 | ||
Firmicutes Bacillales | Bacillus subtilis 168 | 1.6 | M |
Oceanobacillus iheyensis HTE831 | 1.6 | ||
Stapylococcus aureus MW2 | 1.6 | ||
Listeria monocytogenes EGD-e | 1.8 | M | |
Listeria innocua Clip11262 | 1.8 | ||
Firmicutes Clostridia | Clostridium acetobutylicum ATCC824 | 1.6 | |
Clostridium tetani E88 | 1.6 | ||
Thermoanaerobacter tengcongensis MB4T | 2.0 | ||
Firmicutes Lactobacillales | Lactococcus lactis IL1403 | 1.5 | M |
Streptococcus agalactiae 2603 | 1.8 | ||
Streptococcus pneumoniae R6 | 1.8 | ||
Lactobacillus plantarum WCFS1 | 1.6 | M | |
Enterococcus faecalis V583 | 1.8 | ||
Firmicutes Mollicutes | Mycoplasma pneumoniae M129 | 2.1 | M |
Mycoplasma genitalium G37 | 3.1 | V | |
Mycoplasma penetrans HF-2 | 1.6 | ||
Ureaplasma urealyticum (serovar 3) | 2.1 | ||
Actinobacteria | Mycobacterium tuberculosis H37Rv | 1.7 | M |
Corynebacterium glutamicum ATCC 13032 | 1.5 | ||
Streptomyces coelicolor A3(2) | 1.4 | ||
Tropheryma whipplei Twist | 1.9 | ||
Bifidobacterium longum NCC2705 | 1.3 | V | |
Fusobacteria | Fusobacterium nucleatum ATCC25586 | 2.0 | V |
Chlamydia | Chlamydia trachomatis (serovar D) | 1.6 | |
Chlamydophila pneumoniae AR39 | 1.6 | ||
Spirochete | Borrelia burgdorferi B31 | 1.8 | |
Treponema pallidum Nichols | 1.9 | ||
Leptospira interrogans 56601 | 1.5 | ||
Bacteroid | Bacteroides thetaiotaomicron VPI-5482 | 1.8 | M |
Cyanobacteria | Thermosynechococcus elongatus BP-1 | 1.6 | |
Nostoc sp. PCC 7120 | 1.2 | ||
Green sulfur bacteria | Chlorobium tepidum TLS | 1.6 | |
Deinococcus | Deinococcus radiodurans R1 | 1.5 | V |
Hyperthermophilic bacteria | Aquifex aeolicus VF5 | 2.1 | |
Thermotoga maritima MSB8 | 3.0 | V | |
Archae Euryarchaeota | Methanococcus jannaschii DSM2661 | 1.8 | M |
Pyrococcus furiosus DSM3638 | 2.0 | M | |
Archaeoglobus fulgidus DSM4304 | 2.1 | ||
Thermoplasma acidophilum DSM1728 | 1.5 | ||
Methanosarcina acetivorans C2A | 1.3 | V | |
Methanosarcina mazei Goe1 | 1.3 | ||
Pyrococcus abyssi | 2.1 | ||
Archae Crenarchaeota | Aeropyrum pernix K1 | 2.0 | |
Sulfolobus solfotaricus P2 | 1.6 | ||
Pyrobaculum aerophilum IM2 | 1.7 |