Table 2 Top 50 InterPro superfamily/domains that have been mapped to clusters with one-to-one correspondence
InterPro family/Domain ID | Type | Number of proteins in the benchmark dataset | Description |
|---|---|---|---|
IPR001128 | Family | 507 | Cytochrome P450 |
IPR000685 | Family | 398 | Ribulose bisphosphate carboxylase, large chain |
IPR002198 | Family | 290 | Short-chain dehydrogenase/reductase SDR |
IPR004000 | Family | 255 | Actin/actin-like |
IPR002423 | Family | 226 | Chaperonin Cpn60/TCP-1 |
IPR001023 | Family | 221 | Heat shock protein Hsp70 |
IPR002085 | Family | 181 | Zinc-containing alcohol dehydrogenase superfamily |
IPR000173 | Family | 177 | Glyceraldehyde 3-phosphate dehydrogenase |
IPR001175 | Family | 169 | Neurotransmitter-gated ion-channel |
IPR000910 | Family | 169 | HMG1/2 (high mobility group) box |
IPR001353 | Family | 147 | 20S proteasome, A and B subunits |
IPR000894 | Family | 141 | Ribulose bisphosphate carboxylase, small chain |
IPR000298 | Family | 135 | Cytochrome c oxidase, subunit III |
IPR001019 | Family | 135 | Guanine nucleotide binding protein (G-protein), alpha subunit |
IPR000568 | Family | 134 | H+-transporting two-sector ATPase, A subunit |
IPR001400 | Family | 133 | Somatotropin hormone |
IPR000883 | Family | 131 | Cytochrome c oxidase, subunit I |
IPR001364 | Family | 131 | Hemagglutinin, HA1/HA2 chain |
IPR00970 | Family | 130 | Secreted growth factor Wnt protein |
IPR001664 | Family | 127 | Intermediate filament protein |
IPR000847 | Domain | 127 | Bacterial regulatory protein, LysR |
IPR001659 | Family | 124 | Phycobilisome protein |
IPR001694 | Family | 123 | Respiratory-chain NADH dehydrogenase, subunit 1 |
IPR001811 | Family | 119 | Small chemokine, interleukin-8 like |
IPR000215 | Family | 118 | Proteinase inhibititor I4, serpin |
IPR001926 | Family | 114 | Pyridoxal-5'-phosphate-dependent enzyme, beta subunit |
IPR000515 | Family | 113 | Binding-protein-dependent transport systems inner membrane component |
IPR001424 | Family | 112 | Copper/Zinc superoxide dismutase |
IPR001804 | Family | 111 | Isocitrate/isopropylmalate dehydrogenase |
IPR001691 | Domain | 109 | Glutamine synthetase, catalytic domain |
IPR000934 | Domain | 105 | Metallophosphoesterase |
IPR001189 | Family | 105 | Manganese and iron superoxide dismutase |
IPR001041 | Domain | 105 | Ferredoxin |
IPR001099 | Family | 104 | Naringenin-chalcone synthase |
IPR001450 | Domain | 102 | 4Fe-4S ferredoxin, iron-sulfur binding domain |
IPR001427 | Family | 102 | Pancreatic ribonuclease |
IPR000484 | Family | 100 | Photosynthetic reaction centre protein |
IPR000954 | Family | 98 | Aminotransferase class-III |
IPR001576 | Family | 93 | Phosphoglycerate kinase |
IPR000230 | Family | 93 | Ribosomal protein S12, bacterial and chloroplast form |
IPR002068 | Domain | 91 | Heat shock protein Hsp20 |
IPR001750 | Domain | 90 | NADH/Ubiquinone/plastoquinone (complex I) |
IPR000836 | Domain | 90 | Phosphoribosyltransferase |
IPR001993 | Family | 90 | Mitochondrial substrate carrier |
IPR001236 | Family | 85 | Lactate/malate dehydrogenase |
IPR002210 | Family | 83 | Papillomavirus major capsid L1 (late) protein |
IPR001395 | Family | 81 | Aldo/keto reductase |
IPR000943 | Family | 80 | Sigma-70 factor |
IPR002226 | Family | 80 | Catalase |
IPR001766 | Domain | 80 | Fork head transcription factor |