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Table 2 Correlation coefficient (CC) and root mean square error (RMSE) for different contact number predictions. All results are expressed as mean ± standard deviation.

From: Better prediction of protein contact number using a support vector regression analysis of amino acid sequence

  

r d = 8 Å

r d = 10 Å

r d = 12 Å

r d = 14 Å

Discrete

CC

0.64 ± 0.01

0.66 ± 0.01

0.69 ± 0.01

0.69 ± 0.01

 

RMSE

0.77 ± 0.01

0.75 ± 0.01

0.72 ± 0.01

0.72 ± 0.02

Consecutive

CC

0.66 ± 0.01

0.67 ± 0.01

0.70 ± 0.01

0.70 ± 0.01

 

RMSE

0.75 ± 0.01

0.74 ± 0.01

0.72 ± 0.01

0.72 ± 0.02