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Table 2 The reference gene clusters (RGCs) of CLB2. Target Gene CLB2 and the connectivities to cis elements.

From: Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification

 

Fkh1

Fkh2

Ndd1

Mcm1

Ace2

Swi5

Mbp1

Swi4

Swi6

          

CLB2 (YPR119W)

1

1

1

1

0

0

0

1

1

          

Reference genes cluster (RGC) and their connectivities to cis elements

ORF

Fkh1

Fkh2

Ndd1

Mcm1

Ace2

Swi5

Mbp1

Swi4

Swi6

ORF

Fkh1

Fkh2

Ndd1

Mcm1

Ace2

Swi5

Mbp1

Swi4

Swi6

YAR018C

0

0

1

1

0

0

0

0

0

YKR013W

0

0

0

0

0

0

0

1

1

YBR133C

0

1

0

0

0

0

0

0

0

YLR056W

0

0

0

0

0

0

0

1

1

YBR138C

1

0

1

0

0

0

0

0

0

YLR084C

0

1

1

1

0

0

0

1

0

YBR139W

1

0

1

0

0

0

0

0

0

YLR131C

0

1

1

1

0

0

0

0

0

YCL063W

1

1

0

0

0

0

0

0

0

YLR190W

0

1

1

1

0

0

0

0

0

YDL227C

0

0

0

0

0

0

0

1

1

YLR209C

1

0

0

0

0

0

0

0

0

YDR033W

0

1

1

0

0

0

0

0

0

YLR210W

1

0

0

0

0

0

0

0

0

YDR146C

0

1

1

1

0

0

0

0

0

YLR274W

0

0

0

1

0

0

0

0

0

YDR150W

0

0

1

0

0

0

0

0

0

YLR342W

0

0

0

0

0

0

0

1

1

YDR224C

0

0

0

0

0

0

0

1

1

YML050W

0

0

1

1

0

0

0

0

0

YDR225W

0

0

0

0

0

0

0

1

1

YML064C

1

1

0

0

0

0

0

0

0

YDR507C

0

0

0

1

0

0

0

1

1

YMR001C

0

0

1

0

0

0

0

0

0

YEL017W

1

0

0

0

0

0

0

0

0

YMR002W

0

0

1

0

0

0

0

0

0

YEL040W

0

1

0

1

0

0

0

1

1

YMR015C

1

0

0

0

0

0

0

1

0

YER001W

0

0

0

0

0

0

0

1

1

YMR183C

1

0

0

0

0

0

0

0

0

YFL026W

0

0

0

1

0

0

0

0

0

YMR253C

0

0

0

1

0

0

0

0

0

YGL032C

0

0

0

1

0

0

0

0

0

YMR305C

0

0

0

0

0

0

0

1

1

YGL038C

0

0

0

0

0

0

0

1

1

YMR307W

0

0

0

0

0

0

0

1

1

YGL116W

0

1

1

1

0

0

0

0

0

YNL056W

0

0

1

1

0

0

0

0

0

YGR014W

0

0

0

0

0

0

0

1

1

YNL058C

0

0

1

1

0

0

0

0

0

YGR099W

1

0

0

0

0

0

0

0

0

YNL231C

0

1

0

0

0

0

0

1

1

YGR151C

0

0

0

0

0

0

0

1

0

YNL300W

0

0

0

0

0

0

0

1

1

YGR152C

0

0

0

0

0

0

0

1

0

YOL011W

0

0

0

0

0

0

0

1

0

YGR153W

0

0

0

0

0

0

0

1

0

YOL030W

1

0

0

0

0

0

0

0

0

YGR221C

0

0

0

0

0

0

0

1

1

YOL114C

0

0

0

0

0

0

0

1

1

YGR279C

0

0

0

0

0

0

0

1

1

YOR066W

0

0

0

1

0

0

0

0

0

YHR061C

0

1

0

0

0

0

0

1

1

YOR073W

0

1

0

0

0

0

0

0

0

YIL056W

0

1

1

0

0

0

0

1

1

YOR372C

0

0

0

0

0

0

0

1

1

YIL121W

0

0

0

0

0

0

0

1

0

YPL032C

1

0

0

0

0

0

0

0

0

YIL123W

0

1

0

1

0

0

0

1

1

YPL116W

1

0

0

0

0

0

0

0

0

YIL158W

0

1

1

1

0

0

0

0

0

YPL127C

0

0

0

0

0

0

0

1

1

YJL051W

0

1

1

1

0

0

0

0

0

YPL141C

1

0

0

0

0

0

0

0

0

YJL079C

0

0

1

1

0

0

0

0

0

YPL155C

0

1

0

0

0

0

0

0

0

YJL157C

0

0

0

1

0

0

0

0

0

YPL163C

0

0

0

0

0

0

0

1

1

YJL158C

0

1

1

0

0

0

0

1

1

YPL255W

0

0

0

0

0

0

0

0

1

YJR054W

0

0

0

0

0

0

0

1

1

YPL256C

0

0

0

0

0

0

0

0

1

YJR092W

1

1

1

1

0

0

0

0

0

YPR013C

1

0

0

0

0

0

0

1

0

YJR110W

0

1

0

0

0

0

0

0

0

YPR119W

1

1

1

1

0

0

0

1

1

YKL096W

0

1

0

0

0

0

0

1

1

YPR149W

0

1

1

0

0

0

0

1

0

YKL103C

0

0

0

0

0

0

0

1

0

YPR159W

0

0

0

0

0

0

0

1

1

YKL209C

0

0

0

1

0

0

0

0

0

         Â