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Table 2 Median pairwise correlations over all sample pairs. For each pair of processing methods, expression levels were computed for each sample in the colon and ovary data sets. Results shown are the median Pearson correlation coefficients over all sample pairs between log-scale expression levels for all genes.

From: Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data

 

Colon

Ovary

GCRMA-EB

0.86

     

0.86

     

MAS5

0.94

0.84

    

0.95

0.84

    

GCRMA-MLE

0.88

0.80

0.91

   

0.89

0.80

0.92

   

PDNN

0.82

0.77

0.74

0.71

  

0.82

0.78

0.76

0.73

  

RMA

0.88

0.81

0.85

0.82

0.85

 

0.89

0.80

0.86

0.85

0.85

 

DChip

0.81

0.73

0.76

0.75

0.81

0.89

0.83

0.74

0.79

0.77

0.83

0.90

 

TM

GCRMA-EB

MAS5

GCRMA-MLE

PDNN

RMA

TM

GCRMA-EB

MAS5

GCRMA-MLE

PDNN

RMA