Table 1 Six scenarios using different proportions of non-differentially expressed genes and different ratios of under- to over-expressed genes with simulated data.
| Â | Number of genes | ||
|---|---|---|---|
Case | Under-expressed | Non-differentially expressed | Over-expressed |
1 | 100 | 500 | 100 |
2 | 100 | 100 | 100 |
3 | 200 | 100 | 100 |
4 | 200 | 100 | 50 |
5 | 200 | 50 | 100 |
6 | 200 | 50 | 50 |