Table 10 Closest neighbors of d 2tgf __ (Transforming growth factor alpha) (g.3.11.1.8). For each method we report the top 16 neighbors and their distance/similarity. To highlight relations within families and superfamilies we represent each SCOP domain by its family designation and append a serial number to create a unique identifier. The complete list of SCOP IDs and their numeric designations is available at http://biozon.org/ftp/data/papers/distance-profile/
BLAST | PSIBLAST | FUGUE | DP-PSIBLAST | DP-FUGUE | |||||
|---|---|---|---|---|---|---|---|---|---|
g.3.11.1.8 | 1e-18 | g.3.11.1.8 | 1e-19 | g.3.11.1.8 | 26.970 | g.3.11.1.8 | 0.0000 | g.3.11.1.8 | - |
g.3.11.1.9 | 8e-04 | g.3.11.1.9 | 3e-04 | g.3.11.1.9 | 9.830 | g.3.11.1.9 | 0.2066 | g.3.11.1.10 | 101.76 |
g.3.11.1.10 | 0.067 | g.3.11.1.10 | 0.028 | g.3.11.1.10 | 9.390 | g.3.11.1.7 | 0.4665 | g.3.11.1.9 | 96.05 |
g.3.11.1.7 | 0.11 | g.3.11.1.7 | 0.057 | g.3.11.1.5 | 5.920 | g.3.11.1.10 | 0.5266 | g.3.11.1.3 | 88.64 |
d.158.1.1.1 | 1.9 | d.158.1.1.1 | 1.2 | g.3.11.1.7 | 5.430 | g.3.11.1.3 | 1.2862 | g.3.11.1.16 | 75.32 |
c.69.1.19.1 | 4.6 | c.69.1.19.1 | 2.0 | g.3.11.1.3 | 5.350 | g.3.11.1.1 | 1.6956 | g.3.11.1.1 | 74.53 |
b.40.2.1.5 | 7.3 | b.40.2.1.5 | 6.3 | g.3.11.1.16 | 5.310 | d.158.1.1.1 | 1.8567 | g.3.11.1.7 | 73.60 |
d.159.1.3.3 | 7.9 | d.159.1.3.3 | 8.3 | g.27.1.1.5 | 5.050 | a.102.1.1.2 | 1.8617 | g.3.11.1.14 | 70.52 |
a.118.8.1.5 | 11 | a.118.8.1.5 | 12 | g.3.11.1.14 | 4.760 | d.10.1.3.2 | 1.8617 | g.3.11.1.5 | 68.21 |
b.77.3.1.2 | 17 | b.68.1.1.2 | 14 | g.3.11.1.1 | 4.040 | d.13.1.1.2 | 1.8617 | g.3.11.1.6 | 61.55 |
b.68.1.1.2 | 21 | b.29.1.3.1 | 15 | a.4.10.1.1 | 3.990 | d.15.9.1.1 | 1.8617 | g.27.1.1.4 | 37.84 |
c.1.10.2.1 | 21 | a.138.1.3.1 | 16 | d.158.1.1.1 | 3.870 | d.5.1.1.2 | 1.8617 | g.3.11.1.13 | 35.63 |
b.45.1.2.1 | 23 | b.77.3.1.2 | 17 | g.3.11.1.2 | 3.790 | a.45.1.1.1 | 1.8719 | g.3.11.1.18 | 30.36 |
b.29.1.3.1 | 24 | c.1.10.2.1 | 22 | g.3.11.1.6 | 3.600 | d.169.1.2.1 | 1.8987 | g.3.11.1.17 | 28.75 |
d.58.3.1.2 | 25 | b.45.1.2.1 | 24 | g.26.1.1.1 | 3.570 | c.3.1.2.7 | 1.9085 | g.3.11.1.11 | 25.26 |