Table 7 Class prediction for new SCOP sequences. Comparison between BLAST, PSIBLAST, FUGUE, DP-FUGUE (Ï„= 3.5, PD, pvalue). The normalized indices (%) are given in parentheses.
| Â | Index | BLAST | PSIBLAST | FUGUE | DP-FUGUE |
|---|---|---|---|---|---|
New families | ROC1-S | 187 (7.03) | 211 (7.71) | 380 (16.35) | 847 (22.56) |
| Â | ROC1-F | 216 (5.68) | 239 (6.34) | 450 (11.65) | 1185 (17.98) |
| Â | TSS | 419 (8.97) | 458 (10.31) | 1014 (24.66) | 1412 (27.58) |
| Â | TFF | 715 (7.78) | 827 (8.79) | 2518 (19.61) | 3512 (22.69) |
New superfamilies | ROC1-F | 8 (0.51) | 11 (0.56) | 42 (0.89) | 187 (1.24) |
| Â | TFF | 156 (1.19) | 169 (1.25) | 853 (3.58) | 1097 (3.33) |