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Table 8 Class prediction for new SCOP sequences with little sequence identity. In this case the analysis is limited to new SCOP sequences with less than 20% sequence identity with respect to the reference set.

From: The distance-profile representation and its application to detection of distantly related protein families

 

Index

BLAST

PSIBLAST

FUGUE

DP-FUGUE

New families

ROC1-S

41 (2.52)

43 (3.14)

73 (8.44)

156 (11.77)

 

ROC1-F

43 (1.95)

45 (2.57)

75 (6.41)

181 (9.89)

 

TSS

94 (4.85)

101 (5.36)

208 (15.80)

255 (17.11)

 

TFF

142 (3.90)

161 (4.49)

364 (12.42)

602 (13.77)

New Superfamilies

ROC1-F

1(0.09)

1 (0.09)

6 (0.36)

50 (0.738)

 

TFF

20 (0.80)

23 (0.92)

119 (2.39)

108 (2.22)