| Index | BLAST | PSIBLAST | FUGUE | DP-FUGUE |
---|---|---|---|---|---|
New families | ROC1-S | 41 (2.52) | 43 (3.14) | 73 (8.44) | 156 (11.77) |
 | ROC1-F | 43 (1.95) | 45 (2.57) | 75 (6.41) | 181 (9.89) |
 | TSS | 94 (4.85) | 101 (5.36) | 208 (15.80) | 255 (17.11) |
 | TFF | 142 (3.90) | 161 (4.49) | 364 (12.42) | 602 (13.77) |
New Superfamilies | ROC1-F | 1(0.09) | 1 (0.09) | 6 (0.36) | 50 (0.738) |
 | TFF | 20 (0.80) | 23 (0.92) | 119 (2.39) | 108 (2.22) |