Figure 3

A: Boxplot of the sensitivity-PAUC (sensitivity given a FP-rate ∈ [0, 0.1]) itemised according the factors dissimilarity measure and θ (weighting of non-matching peaks) for the binary measure based peak-list comparisons. B: Boxplot of the factors scale (cf. Methods – Scaling) and measure of the sensitivity-PAUC (sensitivity given a FP-rate ∈ [0, 0.1]) for intensity measure based peak-list comparisons. The top panels show a clip (ZOOM) of the bottom boxplot, indicated by the green horizontal line. X-axis labels: fm – Fowlkes-Mallows statistics, gower – Gower coefficients, hg – Huberts Γ, rmi – relative mutual information, canberra – Canberra distance, simindex – similarity index, manhattan – Manhattan distance, euclidean – Euclidean distance, dotprod – dot-product measure, cov – covariance, soai – sum of agreeing intensities. Scaling: T – total ion count, N – vector length, S – root mean square, R – ranks.