From: Efficient analysis and extraction of MS/MS result data from Mascot™ result files
Option | Parameters | Explanation |
---|---|---|
type | s_dta m_dat Tab | Describes the output format. Supported types are: s_dta Sequest™'s dta format. Only spectra data will be exported. m_dat split the input into several output files in Mascot™'s output format, one for each query. Tab write out a tabbed format for direct database upload. |
-r | Use CR LF instead of LF as linefeed in data blocks. Some OS need special line feed characters in text files. | |
-v | Increase verbosity mode by one per occurrence of -v. A maximum of two -v is allowed. | |
-f | Overwrite files/allow usage of non-empty directories. Usually, the destination directory must be empty. | |
-p | Preserves files on unsuccessful program termination. Useful for debugging purposes. | |
-S | Show message indicator even if stderr is a terminal. | |
-u | name | Set the username to name, if no entry is present and if the tab output format is selected. |
-U | name | Set the username to name in all cases if the tab output format is selected. This allows changing the username in the result files of Mascot™. |