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Table 3 Results using combined methods

From: An SVM-based system for predicting protein subnuclear localizations

Methods

Combination of AA, DI, TRI

Combination of D1X1, D2X2, and D3X3

Compartment

Accuracy % [MCC]

PML BODY

13.2 [0.073]

29.0 [0.172]

Nuclear Lamina

30.9 [0.275]

43.6 [0.338]

Nuclear Splicing Speckles

32.1 [0.410]

35.7 [0.363]

Chromatin

9.8 [0.170]

19.7 [0.260]

Nucleoplasm

20.0 [0.182]

22.7 [0.206]

Nucleolus

88.1 [0.374]

76.7 [0.367]

Single-localization Overall Accuracy and MCC

50.4 [0.247]

50.0 [0.284]

Multi-localization Overall Accuracy and MCC

62.0 [0.362]

65.2 [0.420]

  1. AA – amino acid composition encoding method;
  2. DI – di-peptide encoding method;
  3. TRI – tri-peptide encoding method;
  4. D1X1 – amino acid composition encoding vector transformed with D1;
  5. D2X2 – di-peptide encoding vector transformed with D2;
  6. D3X3 – tri-peptide encoding vector transformed with D3.