Table 1 Balibase results. Categories ("Cat.") refer to the five Balibase categories. Average 1 is the average sum-of-pairs score over all 141 alignments, while average 2 is the average across all five categories.
From: Kalign – an accurate and fast multiple sequence alignment algorithm
Method | CPU time (sec.) | Cat. 1 | Cat. 2 | Cat. 3 | Cat. 4 | Cat. 5 | Average 1 | Average 2 |
|---|---|---|---|---|---|---|---|---|
Kalign | 27 | 0.85 | 0.92 | 0.79 | 0.88 | 0.92 | 0.86 | 0.87 |
ClustalW | 75 | 0.85 | 0.93 | 0.75 | 0.85 | 0.86 | 0.86 | 0.85 |
Muscle | 75 | 0.88 | 0.93 | 0.82 | 0.88 | 0.97 | 0.89 | 0.89 |
Mafft | 100 | 0.86 | 0.92 | 0.78 | 0.91 | 0.96 | 0.88 | 0.89 |
Dialign | 234 | 0.80 | 0.89 | 0.68 | 0.90 | 0.94 | 0.83 | 0.84 |
T-Coffee | 1286 | 0.86 | 0.93 | 0.78 | 0.92 | 0.96 | 0.88 | 0.89 |