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Table 2 Descriptive block statistics for all 1000 European, African American, and East Asian haplotypes using all SNPs and all SNPs with a MAF of at least 10%

From: Analysis of concordance of different haplotype block partitioning algorithms

European haplotypes      
Method MAF Number of Blocks Mean bp/block Mean SNPs/block % coverage
HapBlock 0.1% 180 951.63 7.49 85.6%
HapBlock 10% 48 3363.60 7.64 80.7%
Gabriel 0.1% 39 4414.28 31.41 86.1%
Gabriel 10% 33 4837.52 10.84 79.8%
MDBlocks 0.1% - - - -
MDBlocks 10% 18 9348.78 20.39 84.4%
African American haplotypes      
Method MAF Number of Blocks Mean bp/block Mean SNPs/block % coverage
HapBlock 0.1% 232 733.52 7.13 85%
HapBlock 10% 61 2499.93 6.26 76.2%
Gabriel 0.1% 40 4433.62 37.85 88.6%
Gabriel 10% 36 4416.75 10.25 80%
MDBlocks 0.1% - - - -
MDBlocks 10% 18 10004.44 21.22 90%
East Asian haplotypes      
Method MAF Number of Blocks Mean bp/block Mean SNPs/block % coverage
HapBlock 0.1% 208 831.83 7.93 86.5%
HapBlock 10% 57 2596.73 5.84 74%
Gabriel 0.1% 41 3966.02 24.12 81.3%
Gabriel 10% 38 3437.13 8.34 65.3%
MDBlocks 0.1% - - - -
MDBlocks 10% 18 10006.11 18.50 90%