Table 1 Population partition block overlaps. The table shows the percentage of total sequence common to all three partitions inferred from each algorithm (HapBlock, Gabriel's method, and MDBlocks) for each population studied.
From: Analysis of concordance of different haplotype block partitioning algorithms
Density | MAF | European | African American | East Asian |
|---|---|---|---|---|
all | 5% | 61% | 53% | 44% |
all | 10% | 57% | 60% | 46% |
1 kb | 0.1% | 43% | 21% | 30% |
1 kb | 5% | 60% | 14% | 22% |
1 kb | 10% | 53% | 17% | 26% |
5 kb | 0.1% | 13% | 3% | 10% |
5 kb | 5% | 29% | 0 | 13% |
5 kb | 10% | 33% | 3% | 12% |