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Table 2 Probe/Gene IDs for MAPKK3. The different probe and gene IDs corresponding to the two annotation releases (V& and V2) where submitted to PANTHER with the listed results. This table summarizes for a single gene the differences and potential ambiguities when submitting gene IDs rather than probe IDs, and illustrates the effect of curation status (obsolete vs. valid) or annotation release. Note that >70% of all gene IDs in the current HGS V2 PGA table carry suffixes, that ~13% of all represented genes have more than one probe ID associated, and that probes often have secondary hits. All of these require different look-up tables to be generated by the user in order to achieve coherency and transparency in the data analysis process.

From: Avoiding inconsistencies over time and tracking difficulties in Applied Biosystems AB1700™/Panther™ probe-to-gene annotations

  

if Probe IDs (V1) are submitted:

if the Gene IDs (V1) are submitted:

Probe ID (V1)

Gene ID (V1)

PANTHER SCORE

PANTHER Gene ID

PANTHER SCORE

PANTHER Gene ID

235514

hCG1993739

2 × 10E-23

hCG1993739

2 × 10–23

hCG1993739

127877

hCG1993739.1

6 × 10E-80

hCG28371

  

182262

hCG1993739.1

3 × 10E-70

hCG1980405

  

234450

hCG1993739.1

6 × 10E-58

hCG1997534

  
  

if Probe IDs (V2) are submitted:

 

if the Gene IDs (V2) are submitted:

 

Probe ID (V2)

Gene ID (V2)

PANTHER SCORE

PANTHER Gene ID

PANTHER SCORE

PANTHER Gene ID

235514

hCG1993739

2 × 10E-23

hCG1993739

2 × 10–23

hCG1993739

127877

hCG1993739.2

6 × 10E-80

hCG28371

  

182262

hCG1993739.2

3 × 10E-70

hCG1980405

  

234450

hCG1993739.2

6 × 10E-58

hCG1997534

  

171301

hCG1993739.2

-

-