Table 1 Data sources included in Atlas.

Data Source

URL

Data Format

Atlas Update

Update Mechanism

GenBank Sequence

ftp://ftp.ncbi.nih.gov/ncbi-asn1/

ASN.1

Daily

Incremental

GenBank Sequence

ftp://ftp.ncbi.nih.gov/ncbi-asn1/

ASN.1

Release

Reload

GenBank Refseq

ftp://ftp.ncbi.nih.gov/refseq/

ASN.1

Daily

Incremental

GenBank Refseq

ftp://ftp.ncbi.nih.gov/refseq/

ASN.1

Release

Reload

NCBI Taxonomy

ftp://ftp.ncbi.nih.gov/pub/taxonomy/

Delimited Text

Release

Reload

HomoloGene

ftp://ftp.ncbi.nih.gov/pub/HomoloGene/

Delimited Text

Daily

Reload

OMIM

ftp://ftp.ncbi.nih.gov/repository/OMIM/

Delimited Text

Daily

Reload

Gene

ftp://ftp.ncbi.nih.gov/gene/

Delimited Text

Daily

Reload

LocusLink

ftp://ftp.ncbi.nih.gov/refseq/LocusLink/

Delimited Text

Daily

Reload

UniProt

ftp://ftp.uniprot.org/pub/databases/uniprot/knowledgebase/

XML

Bi-weekly

Reload

HPRD

http://www.hprd.org/download/

XML

Release

Reload

MINT

http://mint.bio.uniroma2.it/mint/

XML

Release

Reload

DIP

http://dip.doe-mbi.ucla.edu/dip/Download.cgi

XML

Release

Reload

BIND

ftp://ftp.blueprint.org/pub/BIND/current/bindflatfiles/bindindex/

Delimited Text

Release

Reload

GO

http://www.godatabase.org/dev/database/archive/latest/

MySQL dump

Release

Reload