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Table 1 Data sources included in Atlas.

From: Atlas – a data warehouse for integrative bioinformatics

Atlas Data Source Summary Table *
Data Source URL Data Format Atlas Update Update Mechanism
GenBank Sequence ftp://ftp.ncbi.nih.gov/ncbi-asn1/ ASN.1 Daily Incremental
GenBank Sequence ftp://ftp.ncbi.nih.gov/ncbi-asn1/ ASN.1 Release Reload
GenBank Refseq ftp://ftp.ncbi.nih.gov/refseq/ ASN.1 Daily Incremental
GenBank Refseq ftp://ftp.ncbi.nih.gov/refseq/ ASN.1 Release Reload
NCBI Taxonomy ftp://ftp.ncbi.nih.gov/pub/taxonomy/ Delimited Text Release Reload
HomoloGene ftp://ftp.ncbi.nih.gov/pub/HomoloGene/ Delimited Text Daily Reload
OMIM ftp://ftp.ncbi.nih.gov/repository/OMIM/ Delimited Text Daily Reload
Gene ftp://ftp.ncbi.nih.gov/gene/ Delimited Text Daily Reload
LocusLink ftp://ftp.ncbi.nih.gov/refseq/LocusLink/ Delimited Text Daily Reload
UniProt ftp://ftp.uniprot.org/pub/databases/uniprot/knowledgebase/ XML Bi-weekly Reload
HPRD http://www.hprd.org/download/ XML Release Reload
MINT http://mint.bio.uniroma2.it/mint/ XML Release Reload
DIP http://dip.doe-mbi.ucla.edu/dip/Download.cgi XML Release Reload
BIND ftp://ftp.blueprint.org/pub/BIND/current/bindflatfiles/bindindex/ Delimited Text Release Reload
GO http://www.godatabase.org/dev/database/archive/latest/ MySQL dump Release Reload
  1. * up-to-date information about data sources and statistics are available from the Atlas website http://bioinformatics.ubc.ca/atlas/