Two-part permutation tests for DNA methylation and microarray data

BMC Bioinformatics

Table 1 p-values of the original two-part test and the two-part permutation test for seven regions in lung cancer cell lines; DNA methylation data from Siegmund et al. [4]

¹performed based on simple random samples of 20,000 permutations (when using 20,000 permutations a 95%-confidence interval for the p-value is the observed p-value ± 0.007 when p = 0.5, or ± 0.003 when p = 0.05).

ISSN: 1471-2105