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Table 2 Frequencies of different size groups of the p-values of the original two-part test and the two-part permutation test for genes with at least one truncation; data from the microarray experiment of Tschentscher et al. [11]

From: Two-part permutation tests for DNA methylation and microarray data

p-value of the original two-part test p-value of the two-part permutation test
  ≤ 0.001 > 0.001 and ≤ 0.01 > 0.01 and ≤ 0.05 > 0.05 and ≤ 0.1 > 0.1
≤ 0.001 19 0 0 0 0
> 0.001 and ≤ 0.01 39 56 0 0 0
> 0.01 and ≤ 0.05 0 50 164 8 0
> 0.05 and ≤ 0.1 0 0 49 112 17
> 0.1 0 0 0 53 1648