Table 2 Frequencies of different size groups of the p-values of the original two-part test and the two-part permutation test for genes with at least one truncation; data from the microarray experiment of Tschentscher et al. [11]
From: Two-part permutation tests for DNA methylation and microarray data
p-value of the original two-part test | p-value of the two-part permutation test | ||||
|---|---|---|---|---|---|
≤ 0.001 | > 0.001 and ≤ 0.01 | > 0.01 and ≤ 0.05 | > 0.05 and ≤ 0.1 | > 0.1 | |
≤ 0.001 | 19 | 0 | 0 | 0 | 0 |
> 0.001 and ≤ 0.01 | 39 | 56 | 0 | 0 | 0 |
> 0.01 and ≤ 0.05 | 0 | 50 | 164 | 8 | 0 |
> 0.05 and ≤ 0.1 | 0 | 0 | 49 | 112 | 17 |
> 0.1 | 0 | 0 | 0 | 53 | 1648 |